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* linkcmds.c, linkcmds.h, memory.c, memory.h, sample.ptf: New files.
* bridges.c: corrected detection of bridged connections
* clocks.c: removed a printf
* linkcmds.[ch] new files, added output of linker script
* Makefile.am: added new files
* memory.[ch]: new files, detection of memory in SOPC configuration
* nios2gen.c: updated command line parsing and output control
* output.[ch]: improved output of BSP header file
* ptf.[ch]: added ptf_dump_ptf_item and small fixes
* sample.ptf: new file, sample configuration for nios2gen
* README: updated
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